IL_8IP8_267

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAAGGAUUG*CUUGAUUC

Length

18 nucleotides

Bulged bases

8IP8|1|aa|G|1232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_267 not in the Motif Atlas

Geometric match to IL_4V88_447

Geometric discrepancy: 0.324

The information below is about IL_4V88_447

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_34780.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8IP8|1|aa|G|1228
8IP8|1|aa|C|1229
8IP8|1|aa|A|1230
8IP8|1|aa|A|1231
8IP8|1|aa|G|1232
8IP8|1|aa|G|1233
8IP8|1|aa|A|1234
8IP8|1|aa|U|1235
8IP8|1|aa|U|1236
8IP8|1|aa|G|1237
*
8IP8|1|aa|C|1256
8IP8|1|aa|U|1257
8IP8|1|aa|U|1258
8IP8|1|aa|G|1259
8IP8|1|aa|A|1260
8IP8|1|aa|U|1261
8IP8|1|aa|U|1262
8IP8|1|aa|C|1263

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain da

40S ribosomal protein eS10