IL_8IP9_003

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

8IP9|1|aa|A|472

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_003 not in the Motif Atlas

Homologous match to IL_8C3A_394

Geometric discrepancy: 0.1207

The information below is about IL_8C3A_394

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_30569.1

Basepair signature

cWW-cWW-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8IP9|1|aa|U|37
8IP9|1|aa|C|38
8IP9|1|aa|A|39
8IP9|1|aa|A|40
8IP9|1|aa|A|41
*
8IP9|1|aa|U|470
8IP9|1|aa|G|471
8IP9|1|aa|A|472
8IP9|1|aa|C|473
8IP9|1|aa|A|474
8IP9|1|aa|A|475

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ba

40S ribosomal protein eS24

Chain eb

40S ribosomal protein uS4

Chain ja

40S ribosomal protein eS4