IL_8IP9_011

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8IP9|1|aa|U|168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_011 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.104

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8IP9|1|aa|G|141
8IP9|1|aa|G|142
8IP9|1|aa|A|143
8IP9|1|aa|U|144
8IP9|1|aa|A|145
8IP9|1|aa|A|146
8IP9|1|aa|C|147
*
8IP9|1|aa|G|163
8IP9|1|aa|C|164
8IP9|1|aa|U|165
8IP9|1|aa|A|166
8IP9|1|aa|A|167
8IP9|1|aa|U|168
8IP9|1|aa|A|169
8IP9|1|aa|C|170

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ba

40S ribosomal protein eS24

Chain gb

40S ribosomal protein eS6