IL_8IP9_020

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCACG*CGGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_020 not in the Motif Atlas

Geometric match to IL_1J2B_001

Geometric discrepancy: 0.359

The information below is about IL_1J2B_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36661.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8IP9|1|aa|G|272
8IP9|1|aa|C|273
8IP9|1|aa|A|274
8IP9|1|aa|C|275
8IP9|1|aa|G|276
*
8IP9|1|aa|C|287
8IP9|1|aa|G|288
8IP9|1|aa|G|289
8IP9|1|aa|C|290

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain gb

40S ribosomal protein eS6