IL_8IP9_033

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_033 not in the Motif Atlas

Homologous match to IL_8C3A_423

Geometric discrepancy: 0.0778

The information below is about IL_8C3A_423

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.2

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8IP9|1|aa|A|554
8IP9|1|aa|G|555
8IP9|1|aa|G|556
8IP9|1|aa|G|557
8IP9|1|aa|C|558
8IP9|1|aa|A|559
8IP9|1|aa|A|560
8IP9|1|aa|G|561
*
8IP9|1|aa|C|591
8IP9|1|aa|U|592

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain eb

40S ribosomal protein uS4

Chain fb

40S ribosomal protein uS5

Chain ya

40S ribosomal protein eS30