IL_8IP9_039

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_039 not in the Motif Atlas

Homologous match to IL_8C3A_428

Geometric discrepancy: 0.0859

The information below is about IL_8C3A_428

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.5

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8IP9|1|aa|C|631
8IP9|1|aa|G|632
8IP9|1|aa|U|633
8IP9|1|aa|A|634
8IP9|1|aa|G|635
*
8IP9|1|aa|U|973
8IP9|1|aa|C|974
8IP9|1|aa|A|975
8IP9|1|aa|A|976
8IP9|1|aa|G|977

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ga

40S ribosomal protein S23

Chain ib

40S ribosomal protein uS17

Chain pa

40S ribosomal protein uS15