IL_8IP9_043
3D structure
- PDB id
- 8IP9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 40S ribosome in complex with a tRNAi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAAGAAAUU*ACAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP9_043 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.2034
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8IP9|1|aa|G|757
8IP9|1|aa|A|758
8IP9|1|aa|A|759
8IP9|1|aa|G|760
8IP9|1|aa|A|761
8IP9|1|aa|A|762
8IP9|1|aa|A|763
8IP9|1|aa|U|764
8IP9|1|aa|U|765
*
8IP9|1|aa|A|797
8IP9|1|aa|C|798
8IP9|1|aa|A|799
8IP9|1|aa|U|800
8IP9|1|aa|U|801
8IP9|1|aa|A|802
8IP9|1|aa|G|803
8IP9|1|aa|C|804
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain eb
- 40S ribosomal protein uS4
- Chain ib
- 40S ribosomal protein uS17
- Chain ja
- 40S ribosomal protein eS4
- Chain va
- 40S ribosomal protein uS8
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