IL_8IP9_054
3D structure
- PDB id
- 8IP9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 40S ribosome in complex with a tRNAi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 8IP9|1|aa|C|1101, 8IP9|1|aa|U|1103, 8IP9|1|aa|G|1105
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP9_054 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.0845
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8IP9|1|aa|C|1039
8IP9|1|aa|G|1040
8IP9|1|aa|A|1041
*
8IP9|1|aa|U|1100
8IP9|1|aa|C|1101
8IP9|1|aa|U|1102
8IP9|1|aa|U|1103
8IP9|1|aa|U|1104
8IP9|1|aa|G|1105
8IP9|1|aa|G|1106
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain fb
- 40S ribosomal protein uS5
- Chain ga
- 40S ribosomal protein S23
- Chain ib
- 40S ribosomal protein uS17
- Chain pa
- 40S ribosomal protein uS15
- Chain va
- 40S ribosomal protein uS8
- Chain xa
- 40S ribosomal protein eS27
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