IL_8IP9_058
3D structure
- PDB id
- 8IP9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 40S ribosome in complex with a tRNAi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP9_058 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.0658
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8IP9|1|aa|G|1116
8IP9|1|aa|G|1117
8IP9|1|aa|A|1118
8IP9|1|aa|G|1119
8IP9|1|aa|U|1120
8IP9|1|aa|A|1121
8IP9|1|aa|U|1122
8IP9|1|aa|G|1123
*
8IP9|1|aa|U|1134
8IP9|1|aa|G|1135
8IP9|1|aa|A|1136
8IP9|1|aa|A|1137
8IP9|1|aa|A|1138
8IP9|1|aa|C|1139
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain IB
- 60S ribosomal protein eL41
- Chain ga
- 40S ribosomal protein S23
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