IL_8IP9_078

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUA*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_078 not in the Motif Atlas

Geometric match to IL_4KYY_003

Geometric discrepancy: 0.0911

The information below is about IL_4KYY_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8IP9|1|aa|G|1483
8IP9|1|aa|U|1484
8IP9|1|aa|A|1485
*
8IP9|1|aa|U|1536
8IP9|1|aa|U|1537
8IP9|1|aa|C|1538

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ka

40S ribosomal protein uS7

Chain la

40S ribosomal protein uS9

Chain oa

40S ribosomal protein uS13

Chain ra

40S ribosomal protein eS19

Chain ta

40S ribosomal protein eS25