IL_8IP9_080

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_080 not in the Motif Atlas

Homologous match to IL_8C3A_468

Geometric discrepancy: 0.2702

The information below is about IL_8C3A_468

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8IP9|1|aa|U|1504
8IP9|1|aa|U|1505
8IP9|1|aa|G|1506
*
8IP9|1|aa|C|1517
8IP9|1|aa|C|1518
8IP9|1|aa|G|1519

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ra

40S ribosomal protein eS19