IL_8IP9_082

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8IP9|1|aa|C|1645, 8IP9|1|aa|A|1776

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_082 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.0855

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8IP9|1|aa|C|1644
8IP9|1|aa|C|1645
8IP9|1|aa|G|1646
*
8IP9|1|aa|C|1774
8IP9|1|aa|A|1775
8IP9|1|aa|A|1776
8IP9|1|aa|G|1777

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain al

mRNA

Chain cl

Transfer RNA; tRNA

Chain db

40S ribosomal protein eS26