IL_8IP9_083

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_083 not in the Motif Atlas

Homologous match to IL_4V88_464

Geometric discrepancy: 0.1131

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8IP9|1|aa|G|1646
8IP9|1|aa|C|1647
8IP9|1|aa|C|1648
8IP9|1|aa|C|1649
*
8IP9|1|aa|G|1770
8IP9|1|aa|U|1771
8IP9|1|aa|A|1772
8IP9|1|aa|A|1773
8IP9|1|aa|C|1774

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain IB

60S ribosomal protein eL41

Chain al

mRNA

Chain cl

Transfer RNA; tRNA