IL_8IP9_085

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGC*GAAG

Length

7 nucleotides

Bulged bases

8IP9|1|aa|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_085 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.1736

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8IP9|1|aa|C|1652
8IP9|1|aa|G|1653
8IP9|1|aa|C|1654
*
8IP9|1|aa|G|1764
8IP9|1|aa|A|1765
8IP9|1|aa|A|1766
8IP9|1|aa|G|1767

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain IB

60S ribosomal protein eL41

Chain al

mRNA

Chain ga

40S ribosomal protein S23