IL_8IP9_087

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_087 not in the Motif Atlas

Homologous match to IL_8C3A_474

Geometric discrepancy: 0.0856

The information below is about IL_8C3A_474

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_63702.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

13

Unit IDs

8IP9|1|aa|U|1658
8IP9|1|aa|A|1659
8IP9|1|aa|C|1660
*
8IP9|1|aa|G|1758
8IP9|1|aa|A|1759
8IP9|1|aa|A|1760

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain IB

60S ribosomal protein eL41

Chain ga

40S ribosomal protein S23