IL_8IP9_095

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

G(PSU)G*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_095 not in the Motif Atlas

Homologous match to IL_5E81_376

Geometric discrepancy: 0.3729

The information below is about IL_5E81_376

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8IP9|1|cl|G|27
8IP9|1|cl|PSU|28
8IP9|1|cl|G|29
*
8IP9|1|cl|C|41
8IP9|1|cl|A|42
8IP9|1|cl|C|43

Current chains

Chain cl

tRNAi

Nearby chains

Chain aa

Small subunit ribosomal RNA; SSU rRNA