IL_8IP9_101

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCAG*CUUGGAUU

Length

13 nucleotides

Bulged bases

8IP9|1|aa|G|918

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_101 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.1255

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8IP9|1|aa|G|900
8IP9|1|aa|U|901
8IP9|1|aa|C|902
8IP9|1|aa|A|903
8IP9|1|aa|G|904
*
8IP9|1|aa|C|915
8IP9|1|aa|U|916
8IP9|1|aa|U|917
8IP9|1|aa|G|918
8IP9|1|aa|G|919
8IP9|1|aa|A|920
8IP9|1|aa|U|921
8IP9|1|aa|U|922

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain bb

40S ribosomal protein eS1

Chain na

40S ribosomal protein uS11