3D structure

PDB id
8IP9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Wheat 40S ribosome in complex with a tRNAi
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GCAAGGAUUG*CUUGAUUC
Length
18 nucleotides
Bulged bases
8IP9|1|aa|G|1232
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IP9_102 not in the Motif Atlas
Geometric match to IL_4V88_447
Geometric discrepancy: 0.3099
The information below is about IL_4V88_447
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_34780.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW
Number of instances in this motif group
1

Unit IDs

8IP9|1|aa|G|1228
8IP9|1|aa|C|1229
8IP9|1|aa|A|1230
8IP9|1|aa|A|1231
8IP9|1|aa|G|1232
8IP9|1|aa|G|1233
8IP9|1|aa|A|1234
8IP9|1|aa|U|1235
8IP9|1|aa|U|1236
8IP9|1|aa|G|1237
*
8IP9|1|aa|C|1256
8IP9|1|aa|U|1257
8IP9|1|aa|U|1258
8IP9|1|aa|G|1259
8IP9|1|aa|A|1260
8IP9|1|aa|U|1261
8IP9|1|aa|U|1262
8IP9|1|aa|C|1263

Current chains

Chain aa
18S ribosomal RNA

Nearby chains

Chain da
40S ribosomal protein eS10

Coloring options:


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