IL_8IP9_102
3D structure
- PDB id
- 8IP9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 40S ribosome in complex with a tRNAi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCAAGGAUUG*CUUGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 8IP9|1|aa|G|1232
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP9_102 not in the Motif Atlas
- Geometric match to IL_4V88_447
- Geometric discrepancy: 0.3099
- The information below is about IL_4V88_447
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_34780.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8IP9|1|aa|G|1228
8IP9|1|aa|C|1229
8IP9|1|aa|A|1230
8IP9|1|aa|A|1231
8IP9|1|aa|G|1232
8IP9|1|aa|G|1233
8IP9|1|aa|A|1234
8IP9|1|aa|U|1235
8IP9|1|aa|U|1236
8IP9|1|aa|G|1237
*
8IP9|1|aa|C|1256
8IP9|1|aa|U|1257
8IP9|1|aa|U|1258
8IP9|1|aa|G|1259
8IP9|1|aa|A|1260
8IP9|1|aa|U|1261
8IP9|1|aa|U|1262
8IP9|1|aa|C|1263
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain da
- 40S ribosomal protein eS10
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