IL_8IPD_035

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8IPD|1|2|G|748, 8IPD|1|2|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPD_035 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.2174

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8IPD|1|2|G|745
8IPD|1|2|A|746
8IPD|1|2|A|747
8IPD|1|2|G|748
8IPD|1|2|G|749
8IPD|1|2|U|750
8IPD|1|2|G|751
8IPD|1|2|G|752
*
8IPD|1|2|U|911
8IPD|1|2|G|912
8IPD|1|2|U|913
8IPD|1|2|U|914
8IPD|1|2|A|915
8IPD|1|2|C|916
8IPD|1|2|A|917
8IPD|1|2|G|918
8IPD|1|2|C|919

Current chains

Chain 2

28S rRNA

Nearby chains

Chain S

60S ribosomal protein L14

Chain b

60S ribosomal protein L18a

Chain r

Coiled-coil domain-containing protein 86