IL_8IPD_050

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUC*G(B8Q)GCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8Q

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPD_050 not in the Motif Atlas

Geometric match to IL_3BBM_001

Geometric discrepancy: 0.3703

The information below is about IL_3BBM_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.2

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8IPD|1|2|G|1425
8IPD|1|2|G|1426
8IPD|1|2|A|1427
8IPD|1|2|U|1428
8IPD|1|2|C|1429
*
8IPD|1|2|G|1455
8IPD|1|2|B8Q|1456
8IPD|1|2|G|1457
8IPD|1|2|C|1458
8IPD|1|2|A|1459
8IPD|1|2|C|1460

Current chains

Chain 2

28S rRNA

Nearby chains

Chain Z

60S ribosomal protein L18