IL_8IPD_129

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGA*UACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPD_129 not in the Motif Atlas

Homologous match to IL_5TBW_100

Geometric discrepancy: 0.2884

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8IPD|1|2|U|4295
8IPD|1|2|U|4296
8IPD|1|2|G|4297
8IPD|1|2|A|4298
*
8IPD|1|2|U|4312
8IPD|1|2|A|4313
8IPD|1|2|C|4314
8IPD|1|2|A|4315

Current chains

Chain 2

28S rRNA

Nearby chains

Chain R

60S ribosomal protein L5

Chain T

60S ribosomal protein L21