IL_8IPD_170
3D structure
- PDB id
- 8IPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUAGUACU*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8IPD|1|3|U|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IPD_170 not in the Motif Atlas
- Homologous match to IL_8C3A_148
- Geometric discrepancy: 0.3198
- The information below is about IL_8C3A_148
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.9
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
8IPD|1|3|G|71
8IPD|1|3|U|72
8IPD|1|3|U|73
8IPD|1|3|A|74
8IPD|1|3|G|75
8IPD|1|3|U|76
8IPD|1|3|A|77
8IPD|1|3|C|78
8IPD|1|3|U|79
*
8IPD|1|3|G|97
8IPD|1|3|G|98
8IPD|1|3|A|100
8IPD|1|3|A|101
8IPD|1|3|U|102
8IPD|1|3|A|103
8IPD|1|3|C|104
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain R
- 60S ribosomal protein L5
- Chain b
- 60S ribosomal protein L18a
- Chain p
- 60S ribosomal protein L7
- Chain r
- Coiled-coil domain-containing protein 86
- Chain u
- Guanine nucleotide-binding protein-like 3
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