IL_8IPD_189
3D structure
- PDB id
- 8IPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGUAU(OMG)*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 8IPD|1|2|U|4634, 8IPD|1|2|U|4636
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IPD_189 not in the Motif Atlas
- Homologous match to IL_8P9A_346
- Geometric discrepancy: 0.2417
- The information below is about IL_8P9A_346
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_98200.1
- Basepair signature
- cWW-L-R-tHW-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
8IPD|1|2|U|4632
8IPD|1|2|G|4633
8IPD|1|2|U|4634
8IPD|1|2|A|4635
8IPD|1|2|U|4636
8IPD|1|2|OMG|4637
*
8IPD|1|2|C|4662
8IPD|1|2|G|4663
8IPD|1|2|A|4664
8IPD|1|2|A|4665
8IPD|1|2|G|4666
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 7
- Probable ribosome biogenesis protein RLP24
- Chain 9
- Zinc finger protein 593
- Chain B
- 60S ribosomal protein L3
- Chain j
- 60S ribosomal protein L31
Coloring options: