IL_8IPX_069
3D structure
- PDB id
- 8IPX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- UUUUG*C(A2M)GAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IPX_069 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.2828
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
8IPX|1|2|U|1860
8IPX|1|2|U|1861
8IPX|1|2|U|1862
8IPX|1|2|U|1863
8IPX|1|2|G|1864
*
8IPX|1|2|C|1870
8IPX|1|2|A2M|1871
8IPX|1|2|G|1872
8IPX|1|2|A|1873
8IPX|1|2|A|1874
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain J
- Ribosome biogenesis protein NSA2 homolog
- Chain u
- Guanine nucleotide-binding protein-like 3
- Chain w
- G Protein Nucleolar 2
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