IL_8IPX_115

3D structure

PDB id

8IPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C'

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UCA(A2M)AGU*AAUGAAG

Length

14 nucleotides

Bulged bases

8IPX|1|2|G|3735

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPX_115 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1843

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8IPX|1|2|U|3715
8IPX|1|2|C|3716
8IPX|1|2|A|3717
8IPX|1|2|A2M|3718
8IPX|1|2|A|3719
8IPX|1|2|G|3720
8IPX|1|2|U|3721
*
8IPX|1|2|A|3732
8IPX|1|2|A|3733
8IPX|1|2|U|3734
8IPX|1|2|G|3735
8IPX|1|2|A|3736
8IPX|1|2|A|3737
8IPX|1|2|G|3738

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36