IL_8IPX_138

3D structure

PDB id

8IPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C'

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPX_138 not in the Motif Atlas

Geometric match to IL_1U6B_007

Geometric discrepancy: 0.3666

The information below is about IL_1U6B_007

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

8IPX|1|2|C|4537
8IPX|1|2|G|4538
*
8IPX|1|2|C|4547
8IPX|1|2|A|4548
8IPX|1|2|G|4549

Current chains

Chain 2

28S rRNA

Nearby chains

Chain J

Ribosome biogenesis protein NSA2 homolog

Chain m

60S ribosomal protein L8

Chain w

G Protein Nucleolar 2