IL_8IPX_166
3D structure
- PDB id
- 8IPX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- AUCUC*GAUCU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IPX_166 not in the Motif Atlas
- Homologous match to IL_8C3A_147
- Geometric discrepancy: 0.1946
- The information below is about IL_8C3A_147
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.10
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
8IPX|1|3|A|32
8IPX|1|3|U|33
8IPX|1|3|C|34
8IPX|1|3|U|35
8IPX|1|3|C|36
*
8IPX|1|3|G|41
8IPX|1|3|A|42
8IPX|1|3|U|43
8IPX|1|3|C|44
8IPX|1|3|U|45
Current chains
- Chain 3
- 5S RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain C
- 60S ribosomal protein L11
- Chain R
- 60S ribosomal protein L5
Coloring options: