IL_8IPX_176
3D structure
- PDB id
- 8IPX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8IPX|1|2|A|1650, 8IPX|1|2|G|1654
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IPX_176 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.1558
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8IPX|1|2|OMG|1522
8IPX|1|2|A|1523
8IPX|1|2|A2M|1524
8IPX|1|2|A|1525
8IPX|1|2|G|1526
*
8IPX|1|2|C|1648
8IPX|1|2|U|1649
8IPX|1|2|A|1650
8IPX|1|2|G|1651
8IPX|1|2|U|1652
8IPX|1|2|A|1653
8IPX|1|2|G|1654
8IPX|1|2|C|1655
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L4
- Chain M
- 60S ribosomal protein L37
- Chain Q
- 60S ribosomal protein L13
- Chain U
- 60S ribosomal protein L15
- Chain w
- G Protein Nucleolar 2
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