3D structure

PDB id
8IPY (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State D'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGCCCGAU*GG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IPY_071 not in the Motif Atlas
Homologous match to IL_8C3A_052
Geometric discrepancy: 0.1919
The information below is about IL_8C3A_052
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_84902.1
Basepair signature
cWW-L-cWW-L-L-R-cHH
Number of instances in this motif group
2

Unit IDs

8IPY|1|2|C|1911
8IPY|1|2|G|1912
8IPY|1|2|C|1913
8IPY|1|2|C|1914
8IPY|1|2|C|1915
8IPY|1|2|G|1916
8IPY|1|2|A|1917
8IPY|1|2|U|1918
*
8IPY|1|2|G|2064
8IPY|1|2|G|2065

Current chains

Chain 2
28S rRNA

Nearby chains

Chain V
60S ribosomal protein L13a
Chain b
60S ribosomal protein L18a
Chain n
60S ribosomal protein L35a
Chain p
60S ribosomal protein L7

Coloring options:


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