IL_8IPY_074
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 8IPY|1|2|U|1930, 8IPY|1|2|C|1931, 8IPY|1|2|G|2055, 8IPY|1|2|A|2057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IPY_074 not in the Motif Atlas
- Homologous match to IL_5TBW_051
- Geometric discrepancy: 0.2358
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8IPY|1|2|C|1926
8IPY|1|2|U|1927
8IPY|1|2|C|1928
8IPY|1|2|A|1929
8IPY|1|2|U|1930
8IPY|1|2|C|1931
8IPY|1|2|A|1932
8IPY|1|2|G|1933
*
8IPY|1|2|C|2053
8IPY|1|2|U|2054
8IPY|1|2|G|2055
8IPY|1|2|G|2056
8IPY|1|2|A|2057
8IPY|1|2|G|2058
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L9
- Chain J
- Ribosome biogenesis protein NSA2 homolog
- Chain S
- 60S ribosomal protein L14
- Chain V
- 60S ribosomal protein L13a
- Chain b
- 60S ribosomal protein L18a
- Chain u
- Guanine nucleotide-binding protein-like 3
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