IL_8IPY_077

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8IPY|1|2|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPY_077 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2444

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8IPY|1|2|U|1957
8IPY|1|2|A|1958
8IPY|1|2|U|1959
8IPY|1|2|A|1960
8IPY|1|2|G|1961
8IPY|1|2|A|1962
8IPY|1|2|C|1963
8IPY|1|2|A|1964
8IPY|1|2|G|1965
*
8IPY|1|2|C|2022
8IPY|1|2|C|2023
8IPY|1|2|G|2024
8IPY|1|2|A|2025
8IPY|1|2|A|2026

Current chains

Chain 2

28S rRNA

Nearby chains

Chain r

Coiled-coil domain-containing protein 86

Chain v

mRNA turnover protein 4 homolog