IL_8IPY_145
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGUAU(OMG)U*GCGAAG
- Length
- 13 nucleotides
- Bulged bases
- 8IPY|1|2|U|4634, 8IPY|1|2|U|4636
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IPY_145 not in the Motif Atlas
- Geometric match to IL_5J7L_063
- Geometric discrepancy: 0.3759
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8IPY|1|2|U|4632
8IPY|1|2|G|4633
8IPY|1|2|U|4634
8IPY|1|2|A|4635
8IPY|1|2|U|4636
8IPY|1|2|OMG|4637
8IPY|1|2|U|4638
*
8IPY|1|2|G|4661
8IPY|1|2|C|4662
8IPY|1|2|G|4663
8IPY|1|2|A|4664
8IPY|1|2|A|4665
8IPY|1|2|G|4666
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 7
- Probable ribosome biogenesis protein RLP24
- Chain 9
- Zinc finger protein 593
- Chain B
- 60S ribosomal protein L3
- Chain j
- 60S ribosomal protein L31
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