3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CCGG*CG
Length
6 nucleotides
Bulged bases
8IR1|1|2|C|340
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IR1_014 not in the Motif Atlas
Geometric match to IL_1U9S_005
Geometric discrepancy: 0.1999
The information below is about IL_1U9S_005
Detailed Annotation
Minor groove platform, major groove intercalation
Broad Annotation
Minor groove platform, major groove intercalation
Motif group
IL_95583.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
11

Unit IDs

8IR1|1|2|C|339
8IR1|1|2|C|340
8IR1|1|2|G|341
8IR1|1|2|G|342
*
8IR1|1|8|C|32
8IR1|1|8|G|33

Current chains

Chain 2
28S rRNA
Chain 8
5.8S rRMA

Nearby chains

Chain D
60S ribosomal protein L4
Chain M
60S ribosomal protein L37
Chain Q
60S ribosomal protein L13

Coloring options:


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