IL_8IR1_036
3D structure
- PDB id
- 8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAGGUGG*UGUUACAGC
- Length
- 17 nucleotides
- Bulged bases
- 8IR1|1|2|G|748, 8IR1|1|2|C|916
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IR1_036 not in the Motif Atlas
- Geometric match to IL_5TBW_020
- Geometric discrepancy: 0.2099
- The information below is about IL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8IR1|1|2|G|745
8IR1|1|2|A|746
8IR1|1|2|A|747
8IR1|1|2|G|748
8IR1|1|2|G|749
8IR1|1|2|U|750
8IR1|1|2|G|751
8IR1|1|2|G|752
*
8IR1|1|2|U|911
8IR1|1|2|G|912
8IR1|1|2|U|913
8IR1|1|2|U|914
8IR1|1|2|A|915
8IR1|1|2|C|916
8IR1|1|2|A|917
8IR1|1|2|G|918
8IR1|1|2|C|919
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain S
- 60S ribosomal protein L14
- Chain b
- 60S ribosomal protein L18a
- Chain r
- Coiled-coil domain-containing protein 86
- Chain u
- Guanine nucleotide-binding protein-like 3
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