IL_8IR1_079

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8IR1|1|2|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_079 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.1893

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8IR1|1|2|U|1957
8IR1|1|2|A|1958
8IR1|1|2|U|1959
8IR1|1|2|A|1960
8IR1|1|2|G|1961
8IR1|1|2|A|1962
8IR1|1|2|C|1963
8IR1|1|2|A|1964
8IR1|1|2|G|1965
*
8IR1|1|2|C|2022
8IR1|1|2|C|2023
8IR1|1|2|G|2024
8IR1|1|2|A|2025
8IR1|1|2|A|2026

Current chains

Chain 2

28S rRNA

Nearby chains

Chain r

Coiled-coil domain-containing protein 86

Chain v

mRNA turnover protein 4 homolog