IL_8IR1_140

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAU(OMG)U*GCGAAG

Length

13 nucleotides

Bulged bases

8IR1|1|2|U|4634, 8IR1|1|2|U|4636

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_140 not in the Motif Atlas

Geometric match to IL_3BBM_001

Geometric discrepancy: 0.28

The information below is about IL_3BBM_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.2

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8IR1|1|2|U|4632
8IR1|1|2|G|4633
8IR1|1|2|U|4634
8IR1|1|2|A|4635
8IR1|1|2|U|4636
8IR1|1|2|OMG|4637
8IR1|1|2|U|4638
*
8IR1|1|2|G|4661
8IR1|1|2|C|4662
8IR1|1|2|G|4663
8IR1|1|2|A|4664
8IR1|1|2|A|4665
8IR1|1|2|G|4666

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 7

Probable ribosome biogenesis protein RLP24

Chain B

60S ribosomal protein L3

Chain j

60S ribosomal protein L31