3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UGUAU(OMG)U*GCGAAG
Length
13 nucleotides
Bulged bases
8IR1|1|2|U|4634, 8IR1|1|2|U|4636
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IR1_140 not in the Motif Atlas
Geometric match to IL_3BBM_001
Geometric discrepancy: 0.28
The information below is about IL_3BBM_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_47352.1
Basepair signature
cWW-cWW-L-R-tHS-L-cWW
Number of instances in this motif group
4

Unit IDs

8IR1|1|2|U|4632
8IR1|1|2|G|4633
8IR1|1|2|U|4634
8IR1|1|2|A|4635
8IR1|1|2|U|4636
8IR1|1|2|OMG|4637
8IR1|1|2|U|4638
*
8IR1|1|2|G|4661
8IR1|1|2|C|4662
8IR1|1|2|G|4663
8IR1|1|2|A|4664
8IR1|1|2|A|4665
8IR1|1|2|G|4666

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 7
Probable ribosome biogenesis protein RLP24
Chain B
60S ribosomal protein L3
Chain j
60S ribosomal protein L31

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