IL_8IR1_155

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

8IR1|1|2|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_155 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.1761

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8IR1|1|2|G|5000
8IR1|1|2|U|5001
8IR1|1|2|U|5002
*
8IR1|1|2|G|5045
8IR1|1|2|U|5046
8IR1|1|2|C|5047
8IR1|1|2|A|5048
8IR1|1|2|G|5049
8IR1|1|2|C|5050

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 7

Probable ribosome biogenesis protein RLP24

Chain B

60S ribosomal protein L3

Chain j

60S ribosomal protein L31