IL_8IR1_180

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAU(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

8IR1|1|2|U|4634, 8IR1|1|2|U|4636

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_180 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.3168

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8IR1|1|2|U|4632
8IR1|1|2|G|4633
8IR1|1|2|U|4634
8IR1|1|2|A|4635
8IR1|1|2|U|4636
8IR1|1|2|OMG|4637
*
8IR1|1|2|C|4662
8IR1|1|2|G|4663
8IR1|1|2|A|4664
8IR1|1|2|A|4665
8IR1|1|2|G|4666

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 7

Probable ribosome biogenesis protein RLP24

Chain B

60S ribosomal protein L3

Chain j

60S ribosomal protein L31