IL_8IR3_035

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8IR3|1|2|G|748, 8IR3|1|2|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR3_035 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.2201

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8IR3|1|2|G|745
8IR3|1|2|A|746
8IR3|1|2|A|747
8IR3|1|2|G|748
8IR3|1|2|G|749
8IR3|1|2|U|750
8IR3|1|2|G|751
8IR3|1|2|G|752
*
8IR3|1|2|U|911
8IR3|1|2|G|912
8IR3|1|2|U|913
8IR3|1|2|U|914
8IR3|1|2|A|915
8IR3|1|2|C|916
8IR3|1|2|A|917
8IR3|1|2|G|918
8IR3|1|2|C|919

Current chains

Chain 2

28S rRNA

Nearby chains

Chain S

60S ribosomal protein L14

Chain b

60S ribosomal protein L18a

Chain r

Coiled-coil domain-containing protein 86