IL_8IR3_144
3D structure
- PDB id
- 8IR3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State B'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGUA(PSU)(OMG)U*GCGAAG
- Length
- 13 nucleotides
- Bulged bases
- 8IR3|1|2|U|4634
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IR3_144 not in the Motif Atlas
- Geometric match to IL_3BBM_001
- Geometric discrepancy: 0.2815
- The information below is about IL_3BBM_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47352.2
- Basepair signature
- cWW-cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
8IR3|1|2|U|4632
8IR3|1|2|G|4633
8IR3|1|2|U|4634
8IR3|1|2|A|4635
8IR3|1|2|PSU|4636
8IR3|1|2|OMG|4637
8IR3|1|2|U|4638
*
8IR3|1|2|G|4661
8IR3|1|2|C|4662
8IR3|1|2|G|4663
8IR3|1|2|A|4664
8IR3|1|2|A|4665
8IR3|1|2|G|4666
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 7
- Probable ribosome biogenesis protein RLP24
- Chain 9
- Zinc finger protein 593
- Chain B
- 60S ribosomal protein L3
- Chain j
- 60S ribosomal protein L31
Coloring options: