IL_8J1Z_035

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8J1Z|1|a|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8J1Z_035 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.0678

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8J1Z|1|a|U|1018
8J1Z|1|a|U|1019
8J1Z|1|a|A|1020
8J1Z|1|a|A|1021
8J1Z|1|a|G|1022
8J1Z|1|a|U|1023
8J1Z|1|a|G|1024
*
8J1Z|1|a|C|1140
8J1Z|1|a|U|1141
8J1Z|1|a|A|1142
8J1Z|1|a|A|1143
8J1Z|1|a|A|1144

Current chains

Chain a

23S rRNA

Nearby chains

Chain i

50S ribosomal protein L13