IL_8J1Z_065

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8J1Z|1|a|A|1801, 8J1Z|1|a|C|1816, 8J1Z|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8J1Z_065 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0639

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8J1Z|1|a|U|1798
8J1Z|1|a|G|1799
8J1Z|1|a|C|1800
8J1Z|1|a|A|1801
8J1Z|1|a|A|1802
8J1Z|1|a|A|1803
8J1Z|1|a|C|1804
*
8J1Z|1|a|G|1813
8J1Z|1|a|G|1814
8J1Z|1|a|A|1815
8J1Z|1|a|C|1816
8J1Z|1|a|G|1817
8J1Z|1|a|U|1818
8J1Z|1|a|A|1819
8J1Z|1|a|U|1820
8J1Z|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2