IL_8JDJ_064
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- G(OMG)G*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8JDJ|1|D|A|1637, 8JDJ|1|D|A|1638
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_064 not in the Motif Atlas
- Geometric match to IL_5TBW_033
- Geometric discrepancy: 0.0968
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8JDJ|1|D|G|1624
8JDJ|1|D|OMG|1625
8JDJ|1|D|G|1626
*
8JDJ|1|D|U|1636
8JDJ|1|D|A|1637
8JDJ|1|D|A|1638
8JDJ|1|D|U|1639
8JDJ|1|D|C|1640
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain G
- 60S ribosomal protein L8
- Chain S
- 60S ribosomal protein L15
- Chain U
- 60S ribosomal protein L17
- Chain o
- 60S ribosomal protein L37
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