IL_8JDJ_085

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8JDJ|1|D|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDJ_085 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.353

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8JDJ|1|D|U|1957
8JDJ|1|D|A|1958
8JDJ|1|D|U|1959
8JDJ|1|D|A|1960
8JDJ|1|D|G|1961
8JDJ|1|D|A|1962
8JDJ|1|D|C|1963
8JDJ|1|D|A|1964
8JDJ|1|D|G|1965
*
8JDJ|1|D|C|2022
8JDJ|1|D|C|2023
8JDJ|1|D|G|2024
8JDJ|1|D|A|2025
8JDJ|1|D|A|2026

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain X

60S ribosomal protein L18a

Chain r

Ubiquitin-60S ribosomal protein L40