IL_8JDJ_224
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_224 not in the Motif Atlas
- Geometric match to IL_4V88_418
- Geometric discrepancy: 0.0913
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8JDJ|1|w|C|676
8JDJ|1|w|G|677
8JDJ|1|w|U|678
8JDJ|1|w|A|679
8JDJ|1|w|G|680
*
8JDJ|1|w|U|1025
8JDJ|1|w|C|1026
8JDJ|1|w|A|1027
8JDJ|1|w|A|1028
8JDJ|1|w|G|1029
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 8
- 40S ribosomal protein S11
- Chain 9
- 40S ribosomal protein S13
- Chain AI
- 40S ribosomal protein S15a
- Chain AJ
- 40S ribosomal protein S23
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
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