IL_8JDJ_233
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GGCC*GAAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_233 not in the Motif Atlas
- Homologous match to IL_4V88_430
- Geometric discrepancy: 0.1013
- The information below is about IL_4V88_430
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8JDJ|1|w|G|928
8JDJ|1|w|G|929
8JDJ|1|w|C|930
8JDJ|1|w|C|931
*
8JDJ|1|w|G|1010
8JDJ|1|w|A|1011
8JDJ|1|w|A|1012
8JDJ|1|w|U|1013
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 9
- 40S ribosomal protein S13
- Chain AN
- 40S ribosomal protein S27
- Chain y
- 40S ribosomal protein S3a
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