IL_8JDJ_257
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 8JDJ|1|w|C|1493, 8JDJ|1|w|U|1494, 8JDJ|1|w|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_257 not in the Motif Atlas
- Geometric match to IL_4V88_451
- Geometric discrepancy: 0.0968
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8JDJ|1|w|U|1333
8JDJ|1|w|G|1334
8JDJ|1|w|G|1335
*
8JDJ|1|w|U|1492
8JDJ|1|w|C|1493
8JDJ|1|w|U|1494
8JDJ|1|w|G|1495
8JDJ|1|w|U|1496
8JDJ|1|w|G|1497
8JDJ|1|w|A|1498
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 0
- 40S ribosomal protein S3
- Chain 7
- 40S ribosomal protein S10
- Chain AG
- 40S ribosomal protein S20
- Chain AP
- 40S ribosomal protein S29
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