IL_8JDJ_309

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGUAU(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

8JDJ|1|D|U|4634, 8JDJ|1|D|U|4636

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDJ_309 not in the Motif Atlas

Homologous match to IL_8P9A_346

Geometric discrepancy: 0.2623

The information below is about IL_8P9A_346

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_98200.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

3

Unit IDs

8JDJ|1|D|U|4632
8JDJ|1|D|G|4633
8JDJ|1|D|U|4634
8JDJ|1|D|A|4635
8JDJ|1|D|U|4636
8JDJ|1|D|OMG|4637
*
8JDJ|1|D|C|4662
8JDJ|1|D|G|4663
8JDJ|1|D|A|4664
8JDJ|1|D|A|4665
8JDJ|1|D|G|4666

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain b

60S ribosomal protein L24

Chain i

60S ribosomal protein L31