IL_8JDK_041

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8JDK|1|D|G|748, 8JDK|1|D|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_041 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1716

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8JDK|1|D|G|745
8JDK|1|D|A|746
8JDK|1|D|A|747
8JDK|1|D|G|748
8JDK|1|D|G|749
8JDK|1|D|U|750
8JDK|1|D|G|751
8JDK|1|D|G|752
*
8JDK|1|D|U|911
8JDK|1|D|G|912
8JDK|1|D|U|913
8JDK|1|D|U|914
8JDK|1|D|A|915
8JDK|1|D|C|916
8JDK|1|D|A|917
8JDK|1|D|G|918
8JDK|1|D|C|919

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L14

Chain X

60S ribosomal protein L18a