IL_8JDK_081
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 8JDK|1|D|U|1930, 8JDK|1|D|C|1931, 8JDK|1|D|G|2055, 8JDK|1|D|A|2057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDK_081 not in the Motif Atlas
- Homologous match to IL_8C3A_054
- Geometric discrepancy: 0.2372
- The information below is about IL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8JDK|1|D|C|1926
8JDK|1|D|U|1927
8JDK|1|D|C|1928
8JDK|1|D|A|1929
8JDK|1|D|U|1930
8JDK|1|D|C|1931
8JDK|1|D|A|1932
8JDK|1|D|G|1933
*
8JDK|1|D|C|2053
8JDK|1|D|U|2054
8JDK|1|D|G|2055
8JDK|1|D|G|2056
8JDK|1|D|A|2057
8JDK|1|D|G|2058
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain N
- 60S ribosomal protein L9
- Chain R
- 60S ribosomal protein L14
- Chain T
- 60S ribosomal protein L13a
- Chain X
- 60S ribosomal protein L18a
- Chain r
- Ubiquitin-60S ribosomal protein L40
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